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Eberhard Korsching, Julian Matschke, Marc Hotfilder.
Splice variants denote differences between a cancer stem cell side population of EWSR1‑ERG‑based Ewing sarcoma cells, its main population and EWSR1‑FLI‑based cells.
Sedigheh Gharbi, Zahra Mohammadi, Maryam Saedi Dezaki, Sadat Dokanehiifard, Shahriar Dabiri, Eberhard Korsching.
Characterization of the first microRNA in human CDH1 that affects cell cycle and apoptosis and indicates breast cancers progression.
The manuscript is accompanied by
Supplementary_File (1.3 MB).
Marc Hotfilder, Nikhil Mallela, Jochen Seggewiss, Uta Dirksen, Eberhard Korsching.
Defining a Characteristic Gene Expression Set Responsible for Cancer Stem Cell Like Features in a sub-population of Ewing Sarcoma Cells CADO-ES1.
Sedigheh Gharbi, Shahriar Khateri, Mohammad Reza Soroush, Mehdi Shamsara, Parisa Naeli, Ali Najafi, Eberhard Korsching*, Seyed Javad Mowla*.
MicroRNA expression in serum samples of sulfur mustard veterans as a diagnostic gateway to improve care.
Christiane Schaefer*, Nikhil Mallela*, Jochen Seggewiss, Birgit Lechtape, Heymut Omran, Uta Dirksen, Eberhard Korsching, Jenny Potratz.
Target Discovery Screens Using Pooled shRNA Libraries and Next Generation Sequencing: a Model Workflow and Analytical Algorithm.
Boecker F, Buerger H, Mallela N,
TMAinspiration: Decode interdependencies in multi-factorial tissue microarray data.
Programs and more: supplementary download.
TMAinspiration was listed in OmicTools from January 19, 2017 to 2020, when the omicX project led by Vincent Henry et al. has ended and the website has shut down.
Poos K, Smida J, Maugg D, Eckstein G, Baumhoer D, Nathrath M, Korsching E.
Genomic heterogeneity of osteosarcoma - shift from single candidates to functional modules.
Poos K, Smida J, Nathrath M, Maugg D, Baumhoer D, Korsching E.
How MicroRNA and Transcription Factor Co-regulatory Networks Affect Osteosarcoma Cell Proliferation.
View the supplementary networks:
The Metabolic (C1) or the Signaling (C2)
microRNA and TF co-regulatory networks
or download the modules:
Met_cluster_1.cys (0.6 MB)
Sig_cluster_2.cys (1.2 MB)
You might want to use Cytoscape.
Buerger H, Boecker F, Packeisen J, Agelopoulos K, Poos K, Nadler W, Korsching E.
Analyzing the basic principles of tissue microarray data measuring the cooperative phenomena of marker proteins in invasive breast cancer.
Hungermann D, Schmidt H, Natrajan R, Tidow N, Poos K, Reis-Filho JS, Brandt B, Buerger H, Korsching E.
Influence of whole arm loss of chromosome 16q on gene expression patterns in oestrogen receptor-positive, invasive breast cancer.
JP_supplementary_data.zip (14.2 MB)
Korsching E, Agelopolous K, Schmidt H, Buchroth I, Gosheger G, Wulfing P, Boecker W, Brandt B, Buerger H.
Improvements in the analysis strategy make single nucleotide polymorphism analysis a powerful tool in the detection and characterization of amplified chromosomal regions in human tumors.
SNPtool.zip (4.3 MB)