Collection of R functions grouped by folder names

The entire codebase is evidently build on top of numerous code contributions from other developers - including those outside the R-Core Team community - that are subject to their respective open-source licenses.

0general

0.source.R
0testplot.R
adaptScale_E.R
adaptScale.R
bablok.passing.R
bar.point.plot.err.ind.R
barplot.ek.R
bin.R
bland.altmann.ek.R
boxplot.ek.R
cat2pdf.R
category.basics.R
category.compactness.R
circle.R
colMeansPerGroup.R
color.mix.R
color.named.R
color.set.R
colum_align_insert.R
count.repeats.int.R
degrees.to.radians.R
errbar.plot.R
expr.boxplot.R
flip.date.str.R
generalized.kappa.Gwet.R
gliding.proportion.R
gliding.proportions.table.R
heatmap.ek.R
hist.plot.categorical.R
hist.plot.color.R
hist.plot.p.l.curve.R
is.even.R
join.dataframe.R
levelplot.R
levene.bartlett.R
linfit.ab.R
linfit.ssq.R
list.wso.R
list2df.R
lo.select.R
m.chisq.fisher.R
outer.diff.R
plot.bar.point.segment.R
plot.sig.bracket.R
pos.max.min.R
replace.NA.rc.R
rm.rows.cols.R
rnd.nature.cron.R
rnd.nature.R
roc.ek.R
rowcolMedians.R
size.sort.panel.R
split.first.col.R
splitdf.R
sumup.blocks.R
test.zero.R
triangle.R
trim.distribution.R
txt.wrap.R
uni_bash_hist.R
vec2mat.no.diag.R
vectors2df.R
write2PDF.R

chromosome

acgh.f.score.R
chromosome.regions.1.R
gene.exon.illustration.R
ideogram.genome.3.R
plot.chromosome.outline.R
plot.colgroup.rowgroup.R
plot.genome.inline.R

cluster

agnes.cl.R
color.groups.R
extract.subtrees.R
f.mds.R
f.tsne.R
JSD.dist.R
local.cluster.optimum.R
plot.profile.cl.R
pm.cl.R
prox.cor.R
pv.cl.R
special.plot.cluster.tsne.R
twoDim.cl.R
vec.pos.R

code2web

pubRsource.R

em

em.test.R

fn_index

0work.R
count_code_rows.R
index.E2.R
source.folder.R
test_parse_all.R

old

index.E.R

test

test_func.R

mtt

adjust.p.R
anova.ek.R
contrast.matrix.R
mtt.perm.R
mtt.R
my.barplot.R
plot.lsd.R
report.R
rnr.R
script.R
test.R

NGS

arti_fastq.R
biom.R
convert.gff.gtf.R
counts.start.in.window.R
coverage.vec.R
custom.sam.R
customize.only.count.R
de_functions_old.R
de_functions.R
duplicated.group.R
enst2ensg.R
fasta_keep.R
normHouseKeeping.R
normSpikeInRegression.R
order.chr.R
plot.exon.levels.R
quant.import.R
reverse.complement.R
venn.Diagram.ek.R

perm_fortran

tins.examples.ek.R
tins.examples.R
tins.import.R
tins.plot.dependencies.R
tins.ref.size.impact.R
tins.sample.size.R

perm01

0.source.R
color.matrix.perm.R
cor.bar.vis.R
delta.vec.similarity.R
enumeration.search.dep.boots.f90.base.dist.R
enumeration.search.dep.boots.f90.R
enumeration.search.dep.boots.GOnly.ext2f90.R
enumeration.search.dep.boots.GOnly.extf90.distribution.R
enumeration.search.dep.boots.GOnly.extf90.R
enumeration.search.dep.boots.GOnly.f90.R
enumeration.search.dep.ssq.f90.R
estimate.ref.size.impact.R
estimation.sample.size.R
linfit.ab.R
linfit.ssq.R
perm.sub.matrix.to.full.R
perm.testing.1.R
plot.order.comparison.R
plot.profile.R
plot.sample.search.dependencies.2.R
plot.sample.search.dependencies.R
proximity.bootstrap.sampling.R
reconstruct.biol.R
regression.difference.R
test.sampling.jitter.R

perm02

0.source.R
color.matrix.perm.R
enumeration.search.dep.boots.f90.base.dist.R
enumeration.search.dep.boots.f90.R
enumeration.search.dep.boots.GOnly.ext2f90.R
enumeration.search.dep.boots.GOnly.extf90.distribution.R
enumeration.search.dep.boots.GOnly.extf90.R
enumeration.search.dep.boots.GOnly.f90.R
enumeration.search.dep.ssq.f90.R
estimation.ref.size.impact.R
estimation.sample.size.R
legend.own.R
linfit.ab.R
linfit.ssq.R
nedl2.R
perm.sub.matrix.to.full.R
perm.testing.1.R
plot.order.comparison.R
plot.profile.R
plot.sample.search.dependencies.2.R
plot.sample.search.dependencies.R
plot.star.weight.R
proximity.bootstrap.sampling.R
reconstruct.biol.R
result.coef.table.R
split2singlelevels.R
test.sampling.noise.R

prox01

f_norm.R
fn_test_norm.R
functions00.R
functions01.R
functions02.R
functions04.R
functions05.R
workflow.R

rank

rank.ek.R
vec.pos.comparison.R

sampling

percentage.replacement.R

sets

intersect_e.R
iu.set.R
merge.R

shuffling

shuffling.P.cor.R
shuffling.p.jp1.R

SNPmatrix

Expression.matrix.R

Survival

0.source.R
multiSurv.R

tdifferential

0.source.R
adjust.p.R
cut.z.R
F.test.fast.R
label.col.R
multi.diff.R
my.barplot.R
plot.candidate.signals.descending.by.group.R
plot.differential.R
plot.volc.R
profilePlot.R
report.R
scale.iqrm.R
scale.it.R
script.R
shapiro.wilk.test.R
t.differential.R
t.test.fast.R
test tdiff.R
Wilcoxon.Mann.Whitney.U.test.R

third_party

convert.external.RData.csv.R
detach.fn.R
prime.test.R
view.rdata.R

var_db

database.R
import.R
join.db.tables.R
main.R